Workflow

Click the nodes to obtain details about each step.

Other

Statistics

If the workflow has been executed in cluster/cloud, runtimes include the waiting time in the queue.

Configuration

Configuration files
File Code
 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
method: XR

sample: 
  - "HXA64A1_ATCACG_sub10k"

layout:
  - "single-end"

adaptor_se: "-a TGGAATTCTCGGGTGCCAAGGAACTCCAGTNNNNNNACGATCTCGTATGCCGTCTTCTGCTTG"

adaptor_pe: "-a TGGAATTCTCGGGTGCCAAGGAACTCCAGTNNNNNNACGATCTCGTATGCCGTCTTCTGCTTG -A TGGAATTCTCGGGTGCCAAGGAACTCCAGTNNNNNNACGATCTCGTATGCCGTCTTCTGCTTG"

cutadapt_se: ""

cutadapt_pe: ""

bowtie2: ""

samtools_q_trim_se: "-q 20"

samtools_q_trim_pe: "-q 20 -bf 0x2"

filter: "'^([1-9]|1[0-9]|2[0-2]|X)'"

# Genome parameters 

build: "GRCh37"

species: "homo_sapiens"

datatype: "dna"

release: "102"

#######
  


 
  

 
1
2
3
4
5
sample: 
  - "HXA64A1_ATCACG_sub10k"


build: "GRCh38"

Loading...